Type: Package
Package: freqpcr
Title: Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk
        Samples
Version: 0.4.0
Authors@R: c(
    person(given="Masaaki", family="Sudo", email="masaaki@sudori.info", role=c("aut", "cre"), comment=c(ORCID="0000-0001-9834-9857"))
    )
Maintainer: Masaaki Sudo <masaaki@sudori.info>
Description: Interval estimation of the population allele frequency
        from qPCR analysis based on the restriction enzyme digestion
        (RED)-DeltaDeltaCq method (Osakabe et al. 2017,
        <doi:10.1016/j.pestbp.2017.04.003>), as well as general
        DeltaDeltaCq analysis. Compatible with the Cq measurement of
        DNA extracted from multiple individuals at once, so called
        "group-testing", this model assumes that the quantity of DNA
        extracted from an individual organism follows a gamma
        distribution. Therefore, the point estimate is robust regarding
        the uncertainty of the DNA yield.
URL: https://github.com/sudoms/freqpcr
Depends: R (>= 3.6), cubature
Imports: methods
License: GPL (>=3)
Encoding: UTF-8
RoxygenNote: 7.1.1
Suggests: knitr, rmarkdown, remotes
VignetteBuilder: knitr
Config/pak/sysreqs: make
Repository: https://sudoms.r-universe.dev
Date/Publication: 2022-01-26 10:54:10 UTC
RemoteUrl: https://github.com/sudoms/freqpcr
RemoteRef: HEAD
RemoteSha: 10021cb1f3c7940d1114828adbe52cff854cc859
NeedsCompilation: no
Packaged: 2026-10-06 10:33:19 UTC; root
Author: Masaaki Sudo [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9834-9857>)